Hi Faizal,
Yes to FDK, but you could also check how the lumbar spine disc stiffnesses and ligaments are defined.
Regarding where to make changes - ideally you would not want to change the repository as it would not be correct to refer to a particular version of AMMR anymore.
Most of the changes can be done without modifying the AMMR code. You can change the joint type using code, for example:
Main.HumanModel.BodyModel.Trunk.JointsCervicalSpine.C1C0Jnt.Constraints.CType = {Soft, Soft, Soft, Soft, Soft};
You may want to remove the cervical spine rhythm (#define BM_TRUNK_CERVICAL_RHYTHM OFF) and add a new using the code similar to this:
Kind regards,
Pavel